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1.

Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression.

van Steensel, Bas; Belmont, Andrew S.

Cell ; 169(5): 780-791, 2017 May 18.

Article in English | MEDLINE | ID: mdl-28525751

2.

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.

Dekker, Job; Alber, Frank; Aufmkolk, Sarah; Beliveau, Brian J; Bruneau, Benoit G; Belmont, Andrew S; Bintu, Lacramioara; Boettiger, Alistair; Calandrelli, Riccardo; Disteche, Christine M; Gilbert, David M; Gregor, Thomas; Hansen, Anders S; Huang, Bo; Huangfu, Danwei; Kalhor, Reza; Leslie, Christina S; Li, Wenbo; Li, Yun; Ma, Jian; Noble, William S; Park, Peter J; Phillips-Cremins, Jennifer E; Pollard, Katherine S; Rafelski, Susanne M; Ren, Bing; Ruan, Yijun; Shav-Tal, Yaron; Shen, Yin; Shendure, Jay; Shu, Xiaokun; Strambio-De-Castillia, Caterina; Vertii, Anastassiia; Zhang, Huaiying; Zhong, Sheng.

Mol Cell ; 83(15): 2624-2640, 2023 08 03.

Article in English | MEDLINE | ID: mdl-37419111

3.

p53 mediates target gene association with nuclear speckles for amplified RNA expression.

Alexander, Katherine A; Coté, Allison; Nguyen, Son C; Zhang, Liguo; Gholamalamdari, Omid; Agudelo-Garcia, Paula; Lin-Shiao, Enrique; Tanim, K M A; Lim, Joan; Biddle, Nicolas; Dunagin, Margaret C; Good, Charly R; Mendoza, Mariel R; Little, Shawn C; Belmont, Andrew; Joyce, Eric F; Raj, Arjun; Berger, Shelley L.

Mol Cell ; 81(8): 1666-1681.e6, 2021 04 15.

Article in English | MEDLINE | ID: mdl-33823140

4.

Live-cell chromosome dynamics and outcome of X chromosome pairing events during ES cell differentiation.

Masui, Osamu; Bonnet, Isabelle; Le Baccon, Patricia; Brito, Isabel; Pollex, Tim; Murphy, Niall; Hupé, Philippe; Barillot, Emmanuel; Belmont, Andrew S; Heard, Edith.

Cell ; 145(3): 447-58, 2011 Apr 29.

Article in English | MEDLINE | ID: mdl-21529716

5.

TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes.

Zhang, Liguo; Zhang, Yang; Chen, Yu; Gholamalamdari, Omid; Wang, Yuchuan; Ma, Jian; Belmont, Andrew S.

Genome Res ; 31(2): 251-264, 2021 Feb.

Article in English | MEDLINE | ID: mdl-33355299

6.

Corrigendum: The 4D nucleome project.

Dekker, Job; Belmont, Andrew S; Guttman, Mitchell; Leshyk, Victor O; Lis, John T; Lomvardas, Stavros; Mirny, Leonid A; O'Shea, Clodagh C; Park, Peter J; Ren, Bing; Politz, Joan C Ritland; Shendure, Jay; Zhong, Sheng.

Nature ; 552(7684): 278, 2017 12 14.

Article in English | MEDLINE | ID: mdl-29168505

7.

The 4D nucleome project.

Dekker, Job; Belmont, Andrew S; Guttman, Mitchell; Leshyk, Victor O; Lis, John T; Lomvardas, Stavros; Mirny, Leonid A; O'Shea, Clodagh C; Park, Peter J; Ren, Bing; Politz, Joan C Ritland; Shendure, Jay; Zhong, Sheng.

Nature ; 549(7671): 219-226, 2017 09 13.

Article in English | MEDLINE | ID: mdl-28905911

8.

Nuclear speckle fusion via long-range directional motion regulates speckle morphology after transcriptional inhibition.

Kim, Jiah; Han, Kyu Young; Khanna, Nimish; Ha, Taekjip; Belmont, Andrew S.

J Cell Sci ; 132(8)2019 04 17.

Article in English | MEDLINE | ID: mdl-30858197

9.

Nucleome Browser: an integrative and multimodal data navigation platform for 4D Nucleome.

Zhu, Xiaopeng; Zhang, Yang; Wang, Yuchuan; Tian, Dechao; Belmont, Andrew S; Swedlow, Jason R; Ma, Jian.

Nat Methods ; 19(8): 911-913, 2022 08.

Article in English | MEDLINE | ID: mdl-35864167

10.

CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci.

Tasan, Ipek; Sustackova, Gabriela; Zhang, Liguo; Kim, Jiah; Sivaguru, Mayandi; HamediRad, Mohammad; Wang, Yuchuan; Genova, Justin; Ma, Jian; Belmont, Andrew S; Zhao, Huimin.

Nucleic Acids Res ; 46(17): e100, 2018 09 28.

Article in English | MEDLINE | ID: mdl-29912475

11.

Stable and reproducible transgene expression independent of proliferative or differentiated state using BAC TG-EMBED.

Chaturvedi, Pankaj; Zhao, Binhui; Zimmerman, David L; Belmont, Andrew S.

Gene Ther ; 25(5): 376-391, 2018 08.

Article in English | MEDLINE | ID: mdl-29930343

12.

Transcription upregulation via force-induced direct stretching of chromatin.

Tajik, Arash; Zhang, Yuejin; Wei, Fuxiang; Sun, Jian; Jia, Qiong; Zhou, Wenwen; Singh, Rishi; Khanna, Nimish; Belmont, Andrew S; Wang, Ning.

Nat Mater ; 15(12): 1287-1296, 2016 12.

Article in English | MEDLINE | ID: mdl-27548707

13.

Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function.

Gholamalamdari, Omid; van Schaik, Tom; Wang, Yuchuan; Kumar, Pradeep; Zhang, Liguo; Zhang, Yang; Hernandez Gonzalez, Gabriela A; Vouzas, Athanasios E; Zhao, Peiyao A; Gilbert, David M; Ma, Jian; van Steensel, Bas; Belmont, Andrew S.

bioRxiv ; 2024 Apr 23.

Article in English | MEDLINE | ID: mdl-38712201

14.

Mitotic chromosome structure and condensation.

Belmont, Andrew S.

Curr Opin Cell Biol ; 18(6): 632-8, 2006 Dec.

Article in English | MEDLINE | ID: mdl-17046228

15.

Imaging Method Using CRISPR/dCas9 and Engineered gRNA Scaffolds Can Perturb Replication Timing at the HSPA1 Locus.

Xiong, Xiong; Tasan, Ipek; Yang, Che; Zhang, Meng; Hernandez Gonzalez, Gabriela A; Liu, Shuting; Chaturvedi, Pankaj; Belmont, Andrew S; Zhao, Huimin.

ACS Synth Biol ; 12(5): 1424-1436, 2023 05 19.

Article in English | MEDLINE | ID: mdl-37058298

16.

Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types.

Kumar, Pradeep; Gholamalamdari, Omid; Zhang, Yang; Zhang, Liguo; Vertii, Anastassiia; van Schaik, Tom; Peric-Hupkes, Daan; Sasaki, Takayo; Gilbert, David M; van Steensel, Bas; Ma, Jian; Kaufman, Paul D; Belmont, Andrew S.

bioRxiv ; 2023 Nov 01.

Article in English | MEDLINE | ID: mdl-37961445

17.

BAC TG-EMBED: one-step method for high-level, copy-number-dependent, position-independent transgene expression.

Bian, Qian; Belmont, Andrew S.

Nucleic Acids Res ; 38(11): e127, 2010 Jun.

Article in English | MEDLINE | ID: mdl-20385594

18.

Nuclear Compartments: An Incomplete Primer to Nuclear Compartments, Bodies, and Genome Organization Relative to Nuclear Architecture.

Belmont, Andrew S.

Cold Spring Harb Perspect Biol ; 14(7)2022 07 01.

Article in English | MEDLINE | ID: mdl-34400557

19.

Measuring Cytological Proximity of Chromosomal Loci to Defined Nuclear Compartments with TSA-seq.

Zhang, Liguo; Chen, Yu; Belmont, Andrew S.

Methods Mol Biol ; 2532: 145-186, 2022.

Article in English | MEDLINE | ID: mdl-35867249

20.

In vivo immunogold labeling confirms large-scale chromatin folding motifs.

Kireev, Igor; Lakonishok, Margot; Liu, Wenqiu; Joshi, Vishwas N; Powell, Rick; Belmont, Andrew S.

Nat Methods ; 5(4): 311-3, 2008 Apr.

Article in English | MEDLINE | ID: mdl-18345005

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